generate reasonable default opt_pars
get_opt_pars(params, vars = c("hosp", "death", "report"))baseline parameters
which variables are being fitted to?
Other classic_macpan:
add_d_log(),
add_updated_vaxrate(),
aggregate_agecats(),
calibrate_comb(),
calibrate(),
check_age_cat_compatibility(),
check_contact_rate_setting(),
col_multiply(),
condense_age(),
condense_params_vax(),
condense_state(),
condense_vax(),
dev_is_tikz(),
do_step(),
expand_params_age(),
expand_params_desc_age(),
expand_params_desc_variant(),
expand_params_desc_vax(),
expand_params_mistry(),
expand_params_variant(),
expand_params_vax(),
expand_state_age(),
expand_state_vax(),
expand_stateval_testing(),
fix_pars(),
fix_stored(),
forecast_ensemble(),
forecast_sim(),
getData(),
get_GI_moments(),
get_Gbar(),
get_R0(),
get_doses_per_day(),
get_evec(),
get_kernel_moments(),
get_r(),
invlink_trans(),
make_betavec(),
make_beta(),
make_jac(),
make_ratemat(),
make_state(),
make_test_wtsvec(),
make_vaxrate(),
mk_Nvec(),
mk_agecats(),
mk_contact_rate_setting(),
mk_mistry_Nvec(),
mk_pmat(),
mk_vaxcats(),
mle_fun(),
non_expanded_states,
rExp(),
read_params(),
repair_names_age(),
restore(),
run_sim_ageify(),
run_sim_break(),
run_sim_loglin(),
run_sim_mobility(),
run_sim_range(),
run_sim(),
show_ratemat(),
testify(),
texify(),
trans_state_vars(),
update_contact_rate_setting(),
update_foi(),
update_params_mistry(),
vis_model(),
write_params()
params <- read_params("ICU1.csv")
get_opt_pars(params)
#> $params
#> log_E0 log_beta0 logit_phi1 log_mu
#> 1.60943791 0.00000000 1.15267951 -0.04499737
#>
#> $log_nb_disp
#> hosp death report
#> 0 0 0
#>
get_opt_pars(params,vars="hosp")
#> $params
#> log_E0 log_beta0 log_mu
#> 1.60943791 0.00000000 -0.04499737
#>
#> $log_nb_disp
#> hosp
#> 0
#>
get_opt_pars(params,vars="report")
#> $params
#> log_E0 log_beta0
#> 1.609438 0.000000
#>
#> $log_nb_disp
#> report
#> 0
#>