Expand parameter list to include vaccination
expand_params_vax(
params,
model_type = c("onedose", "twodose"),
vax_doses_per_day = 1e+05,
vax_prop_first_dose = 1,
vax_efficacy_dose1 = 0.6,
vax_efficacy_dose2 = 0.9,
vax_avg_response_time = 14,
vax_avg_response_time_R = 7,
vax_alpha_dose1 = 0.5,
vax_alpha_dose2 = 0.5,
vax_mu_dose1 = 1,
vax_mu_dose2 = 1
)parameter list (e.g. read in with `read_params()`)
choose either the one-dose or the two-dose model
total number of vaccine doses administered per day
the proportion of vaccine doses administered per day that are first doses
infection-blocking vaccine efficacy for dose 1
infection-blocking vaccine efficacy for dose 2
average number of days it takes for a vaccine dose to confer protection for an individual that has never been infected
average number of days it takes for a vaccine dose to confer protection for an individual that has previously been infected (e.g. between being dosed and eliciting the protective immune response)
proportion of infections that are asymptomatic in individuals that have received one dose of the vaccine
proportion of infections that are asymptomatic in individuals that have received two doses of the vaccine
proportion of infections that are mild (vs. severe) in individuals that have received one dose of the vaccine
proportion of infections that are mild (vs. severe) in individuals that have received two doses of the vaccine
Other classic_macpan:
add_d_log(),
add_updated_vaxrate(),
aggregate_agecats(),
calibrate_comb(),
calibrate(),
check_age_cat_compatibility(),
check_contact_rate_setting(),
col_multiply(),
condense_age(),
condense_params_vax(),
condense_state(),
condense_vax(),
dev_is_tikz(),
do_step(),
expand_params_age(),
expand_params_desc_age(),
expand_params_desc_variant(),
expand_params_desc_vax(),
expand_params_mistry(),
expand_params_variant(),
expand_state_age(),
expand_state_vax(),
expand_stateval_testing(),
fix_pars(),
fix_stored(),
forecast_ensemble(),
forecast_sim(),
getData(),
get_GI_moments(),
get_Gbar(),
get_R0(),
get_doses_per_day(),
get_evec(),
get_kernel_moments(),
get_opt_pars(),
get_r(),
invlink_trans(),
make_betavec(),
make_beta(),
make_jac(),
make_ratemat(),
make_state(),
make_test_wtsvec(),
make_vaxrate(),
mk_Nvec(),
mk_agecats(),
mk_contact_rate_setting(),
mk_mistry_Nvec(),
mk_pmat(),
mk_vaxcats(),
mle_fun(),
non_expanded_states,
rExp(),
read_params(),
repair_names_age(),
restore(),
run_sim_ageify(),
run_sim_break(),
run_sim_loglin(),
run_sim_mobility(),
run_sim_range(),
run_sim(),
show_ratemat(),
testify(),
texify(),
trans_state_vars(),
update_contact_rate_setting(),
update_foi(),
update_params_mistry(),
vis_model(),
write_params()
params <- read_params("PHAC.csv")
params_vax <- expand_params_vax(params)