condense vaxified parameters to base parameters
condense_params_vax(params)
vaxified parameters (e.g. generated with `expand_params_vax()`)
an object of class `params_pansim`
Other classic_macpan:
add_d_log()
,
add_updated_vaxrate()
,
aggregate_agecats()
,
calibrate_comb()
,
calibrate()
,
check_age_cat_compatibility()
,
check_contact_rate_setting()
,
col_multiply()
,
condense_age()
,
condense_state()
,
condense_vax()
,
dev_is_tikz()
,
do_step()
,
expand_params_age()
,
expand_params_desc_age()
,
expand_params_desc_variant()
,
expand_params_desc_vax()
,
expand_params_mistry()
,
expand_params_variant()
,
expand_params_vax()
,
expand_state_age()
,
expand_state_vax()
,
expand_stateval_testing()
,
fix_pars()
,
fix_stored()
,
forecast_ensemble()
,
forecast_sim()
,
getData()
,
get_GI_moments()
,
get_Gbar()
,
get_R0()
,
get_doses_per_day()
,
get_evec()
,
get_kernel_moments()
,
get_opt_pars()
,
get_r()
,
invlink_trans()
,
make_betavec()
,
make_beta()
,
make_jac()
,
make_ratemat()
,
make_state()
,
make_test_wtsvec()
,
make_vaxrate()
,
mk_Nvec()
,
mk_agecats()
,
mk_contact_rate_setting()
,
mk_mistry_Nvec()
,
mk_pmat()
,
mk_vaxcats()
,
mle_fun()
,
non_expanded_states
,
rExp()
,
read_params()
,
repair_names_age()
,
restore()
,
run_sim_ageify()
,
run_sim_break()
,
run_sim_loglin()
,
run_sim_mobility()
,
run_sim_range()
,
run_sim()
,
show_ratemat()
,
testify()
,
texify()
,
trans_state_vars()
,
update_contact_rate_setting()
,
update_foi()
,
update_params_mistry()
,
vis_model()
,
write_params()
condense_params_vax(expand_params_vax(read_params("PHAC.csv")))
#> beta0 Ca Cp Cm Cs alpha
#> 1.000000e+00 6.666667e-01 1.000000e+00 1.000000e+00 1.000000e+00 3.900000e-01
#> sigma gamma_a gamma_m gamma_s gamma_p rho
#> 3.030303e-01 1.428571e-01 1.428571e-01 1.748252e-01 8.333333e-01 1.000000e-01
#> delta mu N E0 nonhosp_mort iso_m
#> 0.000000e+00 9.560000e-01 1.000000e+06 5.000000e+00 0.000000e+00 0.000000e+00
#> iso_s phi1 phi2 psi1 psi2 psi3
#> 0.000000e+00 7.600000e-01 2.600000e-01 5.000000e-02 1.250000e-01 2.000000e-01
#> c_prop c_delay_mean c_delay_cv proc_disp zeta
#> 1.000000e-01 1.100000e+01 2.500000e-01 0.000000e+00 0.000000e+00