condense vaxified parameters to base parameters
condense_params_vax(params)vaxified parameters (e.g. generated with `expand_params_vax()`)
an object of class `params_pansim`
Other classic_macpan:
add_d_log(),
add_updated_vaxrate(),
aggregate_agecats(),
calibrate_comb(),
calibrate(),
check_age_cat_compatibility(),
check_contact_rate_setting(),
col_multiply(),
condense_age(),
condense_state(),
condense_vax(),
dev_is_tikz(),
do_step(),
expand_params_age(),
expand_params_desc_age(),
expand_params_desc_variant(),
expand_params_desc_vax(),
expand_params_mistry(),
expand_params_variant(),
expand_params_vax(),
expand_state_age(),
expand_state_vax(),
expand_stateval_testing(),
fix_pars(),
fix_stored(),
forecast_ensemble(),
forecast_sim(),
getData(),
get_GI_moments(),
get_Gbar(),
get_R0(),
get_doses_per_day(),
get_evec(),
get_kernel_moments(),
get_opt_pars(),
get_r(),
invlink_trans(),
make_betavec(),
make_beta(),
make_jac(),
make_ratemat(),
make_state(),
make_test_wtsvec(),
make_vaxrate(),
mk_Nvec(),
mk_agecats(),
mk_contact_rate_setting(),
mk_mistry_Nvec(),
mk_pmat(),
mk_vaxcats(),
mle_fun(),
non_expanded_states,
rExp(),
read_params(),
repair_names_age(),
restore(),
run_sim_ageify(),
run_sim_break(),
run_sim_loglin(),
run_sim_mobility(),
run_sim_range(),
run_sim(),
show_ratemat(),
testify(),
texify(),
trans_state_vars(),
update_contact_rate_setting(),
update_foi(),
update_params_mistry(),
vis_model(),
write_params()
condense_params_vax(expand_params_vax(read_params("PHAC.csv")))
#> beta0 Ca Cp Cm Cs alpha
#> 1.000000e+00 6.666667e-01 1.000000e+00 1.000000e+00 1.000000e+00 3.900000e-01
#> sigma gamma_a gamma_m gamma_s gamma_p rho
#> 3.030303e-01 1.428571e-01 1.428571e-01 1.748252e-01 8.333333e-01 1.000000e-01
#> delta mu N E0 nonhosp_mort iso_m
#> 0.000000e+00 9.560000e-01 1.000000e+06 5.000000e+00 0.000000e+00 0.000000e+00
#> iso_s phi1 phi2 psi1 psi2 psi3
#> 0.000000e+00 7.600000e-01 2.600000e-01 5.000000e-02 1.250000e-01 2.000000e-01
#> c_prop c_delay_mean c_delay_cv proc_disp zeta
#> 1.000000e-01 1.100000e+01 2.500000e-01 0.000000e+00 0.000000e+00