If the detailed description is requested, it is returned as a data frame.
# S3 method for params_pansim
print(x, describe = FALSE, ...)an object of class params_pansim (parameters for pandemic simulation)
print full description?
(unused, for generic consistency)
params <- read_params("ICU1.csv")
print(params)
#> beta0 Ca Cp Cm Cs alpha
#> 1.000000e+00 6.666667e-01 1.000000e+00 1.000000e+00 1.000000e+00 3.333333e-01
#> sigma gamma_a gamma_m gamma_s gamma_p rho
#> 1.923077e-01 1.428571e-01 1.428571e-01 1.748252e-01 2.000000e+00 1.000000e-01
#> delta mu N E0 nonhosp_mort iso_m
#> 0.000000e+00 9.560000e-01 1.000000e+06 5.000000e+00 0.000000e+00 0.000000e+00
#> iso_s phi1 phi2 psi1 psi2 psi3
#> 0.000000e+00 7.600000e-01 5.000000e-01 5.000000e-02 1.250000e-01 2.000000e-01
#> c_prop c_delay_mean c_delay_cv proc_disp zeta
#> 1.000000e-01 1.100000e+01 2.500000e-01 0.000000e+00 0.000000e+00
print(params,describe=TRUE)
#> symbol value
#> 1 beta0 1
#> 2 Ca 0.667
#> 3 Cp 1
#> 4 Cm 1
#> 5 Cs 1
#> 6 alpha 0.333
#> 7 sigma 0.192
#> 8 gamma_a 0.143
#> 9 gamma_m 0.143
#> 10 gamma_s 0.175
#> 11 gamma_p 2
#> 12 rho 0.1
#> 13 delta 0
#> 14 mu 0.956
#> 15 N 1e+06
#> 16 E0 5
#> 17 nonhosp_mort 0
#> 18 iso_m 0
#> 19 iso_s 0
#> 20 phi1 0.76
#> 21 phi2 0.5
#> 22 psi1 0.05
#> 23 psi2 0.125
#> 24 psi3 0.2
#> 25 c_prop 0.1
#> 26 c_delay_mean 11
#> 27 c_delay_cv 0.25
#> 28 proc_disp 0
#> 29 zeta 0
#> meaning
#> 1 Baseline (non-intervention) transmission across categories
#> 2 relative asymptomatic transmission (or contact)
#> 3 relative presymptomatic transmission (or contact)
#> 4 relative mildly symptomatic transmission (or contact)
#> 5 relative severely symptomatic transmission (or contact)
#> 6 Fraction of cases asymptomatic
#> 7 1/time in exposed class
#> 8 1/time for asymptomatic recovery
#> 9 1/time for mildly symptomatic recovery
#> 10 1/time for severely symptomatic transition to hospital/death
#> 11 1/time in pre-symptomatic class
#> 12 1/time in hospital (acute care)
#> 13 Fraction of acute-care cases that are fatal
#> 14 Fraction of symptomatic cases that are mild (or moderate)
#> 15 Population size
#> 16 Initial number exposed
#> 17 probability of mortality without hospitalization
#> 18 Relative self-isolation/distancing of mild cases
#> 19 Relative self-isolation/distancing of severe cases
#> 20 Fraction of hospital cases to ICU
#> 21 Fraction of ICU cases dying
#> 22 Rate of ICU back to acute care
#> 23 Rate of ICU to death
#> 24 Rate of post-ICU to discharge
#> 25 fraction of incidence reported as positive tests
#> 26 average delay between incidence and test report
#> 27 coefficient of variation of testing delay
#> 28 dispersion parameter for process error (0=demog stoch only)
#> 29 phenomenological heterogeneity parameter